SMTL ID : 5w38.1

1.80A resolution structure of human IgG3 Fc (N392K)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: F.17, F.19, V.40, D.41, Q.71, N.73, T.75, R.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.77 NAG-NAG-BMA.2: 8 residues within 4Å: Chain B: F.17, F.19, V.40, D.41, Q.71, N.73, T.75, R.77 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.77

1 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 2 residues within 4Å: Chain A: Q.138, D.189 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Q.138, A:N.166, A:D.189, A:D.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shah, I.S. et al., Structural characterization of the Man5 glycoform of human IgG3 Fc. Mol. Immunol. (2017)

Release Date

2017-10-18

Peptides

Immunoglobulin heavy constant gamma 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin heavy constant gamma 3