SMTL ID : 5w3d.1

The structure of kinesin-14 wild-type Ncd-ADP dimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.153, D.292 Ligands: ADP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.153 MG.3: 4 residues within 4Å: Chain B: T.153, S.263, D.292 Ligands: ADP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.153

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 11 residues within 4Å: Chain A: R.66, R.68, P.69, T.148, G.149, S.150, G.151, K.152, T.153, Y.154 Ligands: MG.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.66, A:G.149, A:S.150, A:S.150, A:G.151, A:K.152, A:T.153, A:Y.154 Salt bridges: A:K.152 pi-Stacking: A:Y.154, A:Y.154 ADP.4: 12 residues within 4Å: Chain B: R.66, R.68, P.69, L.71, T.148, G.149, S.150, G.151, K.152, T.153, Y.154 Ligands: MG.3 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:R.66, B:G.149, B:S.150, B:G.151, B:G.151, B:K.152, B:T.153, B:Y.154 Salt bridges: B:K.152 pi-Stacking: B:Y.154, B:Y.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, H.W. et al., Structural basis of small molecule ATPase inhibition of a human mitotic kinesin motor protein. Sci Rep (2017)

Release Date

2017-12-20

Peptides

Protein claret segregational: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein claret segregational