SMTL ID : 5w3p.1

ANTIBODY C706 IN COMPLEX WTH BETA-AMYLOID PEPTIDE 1-16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.30, R.91 Chain C: E.12, V.13, H.15 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:S.30, A:S.30, C:V.13 Water bridges: A:S.30 Salt bridges: A:R.91, C:H.15 SO4.4: 3 residues within 4Å: Chain B: Q.1, V.2, Y.108 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.2, B:Y.108 SO4.6: 4 residues within 4Å: Chain C: H.15, Q.16, K.17, X.18 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.16, C:K.17 Salt bridges: C:H.15 SO4.7: 7 residues within 4Å: Chain A: R.91 Chain B: N.104 Chain C: D.8, S.9, G.10, Y.11, E.12 9 PLIP interactions: 6 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:S.9, C:G.10, C:Y.11, C:E.12, B:N.104 Water bridges: C:R.6, C:H.7, A:R.91 Salt bridges: A:R.91

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Q.1, W.90, R.91, S.92, S.93 Chain C: A.3, E.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.92, A:S.93, A:S.93 Water bridges: A:R.91 GOL.3: 11 residues within 4Å: Chain A: Q.158, S.160, S.174, S.175, T.176 Chain B: F.172, P.173, V.175, S.183, L.184, S.185 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:F.172, B:S.183, B:S.185, A:S.160, A:S.175, A:T.176 GOL.5: 4 residues within 4Å: Chain B: V.2, R.98, S.101, Y.108 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.98, B:R.98, B:Y.108 Water bridges: B:S.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teplyakov, A. et al., A coiled conformation of amyloid-beta recognized by antibody C706. Alzheimers Res Ther (2017)

Release Date

2017-09-20

Peptides

Antibody C706 Fab LIGHT CHAIN: A
Antibody C706 Fab HEAVY CHAIN: B
Amyloid beta A4 protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
P

Antibody C706 Fab LIGHT CHAIN

Antibody C706 Fab HEAVY CHAIN

Amyloid beta A4 protein

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