- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 12 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.2: 6 residues within 4Å:- Chain A: G.457
- Chain B: G.457
- Chain C: G.457
- Chain D: G.457
- Ligands: NA.13, NA.14
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.456
NA.3: 4 residues within 4Å:- Chain A: I.498
- Chain B: I.498
- Chain C: I.498
- Chain D: I.498
No protein-ligand interaction detected (PLIP)NA.13: 7 residues within 4Å:- Chain A: D.458
- Chain B: D.458
- Chain C: G.457, D.458
- Chain D: G.457, D.458
- Ligands: NA.2
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.457
NA.14: 2 residues within 4Å:- Ligands: NA.2, NA.15
No protein-ligand interaction detected (PLIP)NA.15: 1 residues within 4Å:- Ligands: NA.14
No protein-ligand interaction detected (PLIP)NA.18: 4 residues within 4Å:- Chain A: D.458
- Chain B: D.458
- Chain C: D.458
- Chain D: D.458
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.458
- 4 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
3PE.4: 8 residues within 4Å:- Chain A: V.78, W.385, L.392, F.395, Y.398
- Chain B: L.424, F.428
- Ligands: Y01.8
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.395
3PE.9: 8 residues within 4Å:- Chain B: V.78, W.385, L.392, F.395, Y.398
- Chain D: L.424, F.428
- Ligands: Y01.22
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.395
3PE.11: 8 residues within 4Å:- Chain A: L.424, F.428
- Chain C: V.78, W.385, L.392, F.395, Y.398
- Ligands: Y01.1
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:F.395
3PE.20: 8 residues within 4Å:- Chain C: L.424, F.428
- Chain D: V.78, W.385, L.392, F.395, Y.398
- Ligands: Y01.16
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:F.395
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hirschi, M. et al., Cryo-electron microscopy structure of the lysosomal calcium-permeable channel TRPML3. Nature (2017)
- Release Date
- 2017-10-11
- Peptides
- Mucolipin-3 isoform 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 12 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 4 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hirschi, M. et al., Cryo-electron microscopy structure of the lysosomal calcium-permeable channel TRPML3. Nature (2017)
- Release Date
- 2017-10-11
- Peptides
- Mucolipin-3 isoform 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.