SMTL ID : 5w3u.1 (1 other biounit)

Crystal structure of SsoPox AsB5 mutant (V27A-I76T-Y97W-Y99F-L130P-L226V)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.22, H.24, K.137, D.256 Ligands: CO.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.22, A:H.24, A:D.256, H2O.1 FE2.5: 5 residues within 4Å: Chain B: H.22, H.24, K.137, D.256 Ligands: CO.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.22, B:H.24, B:D.256, H2O.2

2 x CO: COBALT (II) ION(Non-covalent)

CO.2: 6 residues within 4Å: Chain A: H.22, K.137, H.170, H.199, D.256 Ligands: FE2.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.170, A:H.199, H2O.1 CO.6: 5 residues within 4Å: Chain B: W.97, K.137, H.170, H.199 Ligands: FE2.5 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.170, B:H.199, H2O.2

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.18, F.59, F.284, I.288, K.292 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.59, A:K.292, A:K.292 GOL.4: 6 residues within 4Å: Chain A: N.160, K.164, G.189, V.190, D.191, K.194 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.160, A:N.160, A:K.164, A:D.191 GOL.8: 6 residues within 4Å: Chain B: N.160, K.164, G.189, V.190, D.191, K.194 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.160, B:N.160, B:D.191

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 6 residues within 4Å: Chain B: N.172, A.173, H.174, D.202, R.223, F.229 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.173, B:D.202, B:R.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jacquet, P. et al., Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase. Sci Rep (2017)

Release Date

2017-12-20

Peptides

Aryldialkylphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aryldialkylphosphatase

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