SMTL ID : 5w4g.1

Importin binding to NLS peptide of DNA polymerase lambda

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.328, K.329, T.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.330, A:T.330 Water bridges: A:P.328, A:N.331 SO4.2: 2 residues within 4Å: Chain A: Q.333, K.369 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.333 Water bridges: A:K.369, A:K.369, A:D.371 Salt bridges: A:K.369 SO4.3: 2 residues within 4Å: Chain A: R.82, K.83 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.83, A:K.83, A:K.83 Salt bridges: A:R.82, A:K.83 SO4.4: 3 residues within 4Å: Chain A: Q.348, T.390, V.391 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.348, A:V.391 Water bridges: A:T.390, A:E.392 Salt bridges: A:K.434

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: Q.352, V.355, E.392, Q.393, Y.396 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.352, A:Q.352 Water bridges: A:Q.352, A:E.392

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pedersen, L.C. et al., Structure of Importin with bound NLS from DNA polymerase lambda. To Be Published

Release Date

2018-06-13

Peptides

Importin subunit alpha-1: A
DNA polymerase lambda: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Importin subunit alpha-1

DNA polymerase lambda

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