SMTL ID : 5w4v.2 (2 other biounits)

Structure of RORgt bound to a tertiary alcohol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x 9WA: (R)-(4-chloro-2-methoxy-3-{[4-(1H-pyrazol-1-yl)phenyl]methyl}quinolin-6-yl)(1-methyl-1H-imidazol-5-yl)[6-(trifluoromethyl)pyridin-3-yl]methanol(Non-covalent)

9WA.1: 24 residues within 4Å: Chain A: Q.21, L.22, C.55, H.58, L.59, A.62, V.96, L.97, R.99, M.100, A.103, V.111, F.112, F.113, E.114, G.115, F.123, L.131, I.132, I.135, F.136 Chain B: M.48, W.49, W.52 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.59, A:V.111, A:F.113, A:F.123, A:L.131, A:I.135 Hydrogen bonds: A:H.58 pi-Stacking: A:H.58, A:F.113, A:F.113, B:W.52 Halogen bonds: A:C.55 9WA.2: 25 residues within 4Å: Chain A: M.48, W.49, W.52 Chain B: Q.21, L.22, C.55, H.58, L.59, A.62, V.96, L.97, R.99, M.100, A.103, V.111, F.112, F.113, E.114, G.115, F.123, L.126, L.131, I.132, I.135, F.136 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.59, B:L.97, B:L.97, B:V.111, B:F.123, B:I.135, A:W.49 Hydrogen bonds: B:H.58, B:E.114 pi-Stacking: B:H.58, B:F.113, B:F.113 Halogen bonds: B:C.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barbay, J.K. et al., 6-Substituted quinolines as ROR gamma t inverse agonists. Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-12-27

Peptides

Nuclear receptor ROR-gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
F

Nuclear receptor ROR-gamma

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