SMTL ID : 5w5j.1

Identification of potent and selective RIPK2 inhibitors for the treatment of inflammatory diseases

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x 9WS: N-(2-chlorophenyl)pyrazolo[1,5-a]pyridine-3-carboxamide(Non-covalent)

9WS.1: 13 residues within 4Å: Chain A: L.23, V.31, A.44, V.45, K.46, L.78, I.92, T.94, E.95, Y.96, M.97, L.152, F.164 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.44, A:K.46, A:K.46, A:L.78, A:I.92, A:T.94, A:L.152, A:F.164 Hydrogen bonds: A:T.94, A:T.94, A:M.97 Halogen bonds: A:A.44 9WS.4: 13 residues within 4Å: Chain B: L.23, V.31, A.44, V.45, K.46, L.78, I.92, T.94, E.95, Y.96, M.97, L.152, A.162 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.23, B:A.44, B:K.46, B:K.46, B:L.78, B:T.94, B:L.152, B:L.152, B:A.162 Hydrogen bonds: B:T.94, B:M.97

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.109, P.113, R.120, R.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.120 Salt bridges: A:K.109, A:R.224 SO4.3: 4 residues within 4Å: Chain A: H.135, K.208, S.281, F.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.282 Salt bridges: A:H.135, A:K.208 SO4.5: 4 residues within 4Å: Chain B: H.135, S.281, F.282, L.283 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.282, B:L.283 Salt bridges: B:H.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, X. et al., Identification of Potent and Selective RIPK2 Inhibitors for the Treatment of Inflammatory Diseases. ACS Med Chem Lett (2017)

Release Date

2017-10-25

Peptides

Receptor-interacting serine/threonine-protein kinase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-interacting serine/threonine-protein kinase 2

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