SMTL ID : 5w6e.1

PDE1b complexed with compound 3S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.89, H.125, D.126, D.232 Ligands: MG.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.89, A:H.125, A:D.126, A:D.232, H2O.1, H2O.5

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.126 Ligands: ZN.1 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.126, H2O.1, H2O.3, H2O.4, H2O.5, H2O.8

1 x 0NY: 7,8-dimethoxy-N-[(2S)-1-(3-methyl-1H-pyrazol-5-yl)propan-2-yl]quinazolin-4-amine(Non-covalent)

0NY.3: 13 residues within 4Å: Chain A: Y.84, H.85, T.133, M.198, H.235, P.236, L.250, E.253, F.254, L.271, S.282, Q.283, F.286 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.253, A:F.254, A:F.254 Hydrogen bonds: A:Q.283 Water bridges: A:E.253 pi-Stacking: A:H.85, A:F.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Humphrey, J.M. et al., Discovery of Potent and Selective Periphery-Restricted Quinazoline Inhibitors of the Cyclic Nucleotide Phosphodiesterase PDE1. J. Med. Chem. (2018)

Release Date

2018-05-30

Peptides

Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B

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