SMTL ID : 5w6r.2 (1 other biounit)

Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with cyclic peptide CP141099 (P6)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-3-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.23 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: E.147, E.150, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.147, B:E.147 NAG-NAG.3: 1 residues within 4Å: Chain C: N.23 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain D: E.147, E.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.147, D:E.147 NAG-NAG.5: 1 residues within 4Å: Chain E: N.23 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain F: E.147, E.150, S.151, N.154, T.156 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.147, F:E.147, F:E.147

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.286 NAG.8: 1 residues within 4Å: Chain A: N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 NAG.9: 1 residues within 4Å: Chain A: N.268 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain C: N.286 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.286 NAG.11: 1 residues within 4Å: Chain C: N.11 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.11 NAG.12: 1 residues within 4Å: Chain C: N.268 No protein-ligand interaction detected (PLIP) NAG.13: 1 residues within 4Å: Chain E: N.286 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.286 NAG.14: 1 residues within 4Å: Chain E: N.11 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.11 NAG.15: 1 residues within 4Å: Chain E: N.268 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadam, R.U. et al., Potent peptidic fusion inhibitors of influenza virus. Science (2017)

Release Date

2017-10-04

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF
ACE-PH8-ORN-LEU-GLU-TYR-PHE-GLU-TRP-LEU-SER-9WV: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
E

E
G

B
D

D
F

F
H

G
O

H
N

I
Q

Hemagglutinin

Hemagglutinin

ACE-PH8-ORN-LEU-GLU-TYR-PHE-GLU-TRP-LEU-SER-9WV

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