SMTL ID : 5w9a.1

The structure of the Trim5alpha Bbox- coiled coil in complex LC3B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

hetero-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.3, H.6, C.22, C.25 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.3, A:C.22, A:C.25 ZN.2: 4 residues within 4Å: Chain A: C.14, D.17, H.31, H.34 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.14, A:D.17, A:H.31, A:H.34 ZN.3: 4 residues within 4Å: Chain D: C.3, H.6, C.22, C.25 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.3, D:H.6, D:C.22, D:C.25 ZN.4: 4 residues within 4Å: Chain D: C.14, D.17, H.31, H.34 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.14, D:D.17, D:H.31, D:H.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keown, J.R. et al., A helical LC3-interacting region mediates the interaction between the retroviral restriction factor Trim5 alpha and mammalian autophagy-related ATG8 proteins. J. Biol. Chem. (2018)

Release Date

2018-10-10

Peptides

Tripartite motif-containing protein 5: AD
Microtubule-associated proteins 1A/1B light chain 3B: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
C

C
D

Tripartite motif-containing protein 5

Microtubule-associated proteins 1A/1B light chain 3B