SMTL ID : 5w9s.1

Zinc finger of human CXXC5 in complex with CpG DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain C: C.28, G.29, C.31, C.34, C.61, E.62 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.28, C:C.31, C:C.34, C:C.61 ZN.2: 6 residues within 4Å: Chain C: C.40, E.41, C.43, C.46, C.56, K.57 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.40, C:C.43, C:C.46, C:C.56

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain C: R.47, N.48 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.48 Salt bridges: C:R.47

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 6 residues within 4Å: Chain A: C.6 Chain C: I.55, R.59, K.60, C.61, L.64 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants. Structure (2018)

Release Date

2017-10-18

Peptides

CXXC-type zinc finger protein 5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

CXXC-type zinc finger protein 5