SMTL ID : 5wa5.1

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor XMD11-50

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.17 Å

Oligo State

monomer

Ligands

1 x 4K4: 2-[(2-methoxy-4-{[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl}phenyl)amino]-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one(Non-covalent)

4K4.1: 12 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.40, A:L.51, A:L.53, A:Y.98 Hydrogen bonds: A:Q.44, A:N.99 pi-Stacking: A:W.40

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 Water bridges: A:T.62 EDO.3: 9 residues within 4Å: Chain A: T.9, S.10, N.11, P.12, K.14, K.16, N.75, N.76, Y.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.11 Water bridges: A:K.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Structural and Atropisomeric Factors Governing the Selectivity of Pyrimido-benzodiazipinones as Inhibitors of Kinases and Bromodomains. ACS Chem. Biol. (2018)

Release Date

2018-07-04

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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