- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SQ1: [N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide]copper(Non-covalent)
SQ1.1: 21 residues within 4Å:- Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, A.112, D.128
- Chain C: W.120, K.121
- Ligands: GOL.3
17 PLIP interactions:15 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions- Hydrophobic interactions: A:N.49, A:A.50, A:W.79, A:W.79, A:W.79, A:L.110, A:A.112, C:W.120
- Hydrogen bonds: A:N.23, A:S.27, A:Y.43, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128
- Metal complexes: H2O.4
SQ1.5: 21 residues within 4Å:- Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, A.112, D.128
- Chain D: W.120, K.121
- Ligands: GOL.7
16 PLIP interactions:14 interactions with chain B, 1 interactions with chain D, 1 Ligand-Water interactions- Hydrophobic interactions: B:N.49, B:A.50, B:W.79, B:W.79, B:W.79, B:L.110, B:A.112, D:W.120
- Hydrogen bonds: B:N.23, B:S.27, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128
- Metal complexes: H2O.8
SQ1.9: 21 residues within 4Å:- Chain A: W.120, K.121
- Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, A.112, D.128
- Ligands: GOL.11
17 PLIP interactions:15 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions- Hydrophobic interactions: C:N.49, C:A.50, C:W.79, C:W.79, C:W.79, C:L.110, C:A.112, A:W.120
- Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.88, C:D.128
- Metal complexes: H2O.12
SQ1.13: 21 residues within 4Å:- Chain B: W.120, K.121
- Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, A.112, D.128
- Ligands: GOL.15
16 PLIP interactions:14 interactions with chain D, 1 interactions with chain B, 1 Ligand-Water interactions- Hydrophobic interactions: D:N.49, D:A.50, D:W.79, D:W.79, D:W.79, D:L.110, D:A.112, B:W.120
- Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:N.49, D:S.88, D:S.88, D:D.128
- Metal complexes: H2O.16
- 4 x CU: COPPER (II) ION(Non-covalent)
CU.2: 1 residues within 4Å:- Chain A: H.87
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.87
CU.6: 1 residues within 4Å:- Chain B: H.87
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.87
CU.10: 1 residues within 4Å:- Chain C: H.87
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:H.87
CU.14: 1 residues within 4Å:- Chain D: H.87
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:H.87
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 5 residues within 4Å:- Chain A: V.47, G.48
- Chain C: W.120, K.121
- Ligands: SQ1.1
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:G.48, C:K.121, C:K.121
- Water bridges: A:G.48
GOL.7: 5 residues within 4Å:- Chain B: V.47, G.48
- Chain D: W.120, K.121
- Ligands: SQ1.5
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:G.48, D:K.121, D:K.121
- Water bridges: B:G.48
GOL.11: 5 residues within 4Å:- Chain A: W.120, K.121
- Chain C: V.47, G.48
- Ligands: SQ1.9
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:G.48, A:K.121, A:K.121
- Water bridges: C:G.48
GOL.15: 5 residues within 4Å:- Chain B: W.120, K.121
- Chain D: V.47, G.48
- Ligands: SQ1.13
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:G.48, B:K.121, B:K.121
- Water bridges: D:G.48
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: G.48, R.84
3 PLIP interactions:3 interactions with chain A- Water bridges: A:G.48, A:R.84
- Salt bridges: A:R.84
SO4.8: 2 residues within 4Å:- Chain B: G.48, R.84
3 PLIP interactions:3 interactions with chain B- Water bridges: B:G.48, B:R.84
- Salt bridges: B:R.84
SO4.12: 2 residues within 4Å:- Chain C: G.48, R.84
3 PLIP interactions:3 interactions with chain C- Water bridges: C:G.48, C:R.84
- Salt bridges: C:R.84
SO4.16: 2 residues within 4Å:- Chain D: G.48, R.84
3 PLIP interactions:3 interactions with chain D- Water bridges: D:G.48, D:R.84
- Salt bridges: D:R.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mann, S.I. et al., Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-11-22
- Peptides
- Streptavidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SQ1: [N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide]copper(Non-covalent)
- 4 x CU: COPPER (II) ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mann, S.I. et al., Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-11-22
- Peptides
- Streptavidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A