SMTL ID : 5wbd.1

Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins - N49A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x SI7: [N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide](hydroxy)copper(Non-covalent)

SI7.1: 19 residues within 4Å: Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, A.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, S.112, D.128 Chain C: W.120, K.121 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain C, Hydrophobic interactions: A:A.49, A:W.79, A:W.79, A:W.79, A:L.110, C:W.120, C:K.121 Hydrogen bonds: A:N.23, A:S.27, A:Y.43, A:S.45, A:A.49, A:A.86, A:S.88, A:S.88, A:D.128 SI7.3: 19 residues within 4Å: Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, A.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, S.112, D.128 Chain D: W.120, K.121 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain D, Hydrophobic interactions: B:A.49, B:W.79, B:W.79, B:W.79, B:L.110, D:W.120, D:K.121 Hydrogen bonds: B:N.23, B:S.27, B:S.45, B:A.49, B:A.86, B:S.88, B:S.88, B:D.128 SI7.5: 19 residues within 4Å: Chain A: W.120, K.121 Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, A.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, S.112, D.128 16 PLIP interactions: 2 interactions with chain A, 14 interactions with chain C, Hydrophobic interactions: A:W.120, A:K.121, C:A.49, C:W.79, C:W.79, C:W.79, C:L.110 Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:A.49, C:A.86, C:S.88, C:S.88, C:D.128 SI7.7: 19 residues within 4Å: Chain B: W.120, K.121 Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, A.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, S.112, D.128 15 PLIP interactions: 2 interactions with chain B, 13 interactions with chain D, Hydrophobic interactions: B:W.120, B:K.121, D:A.49, D:W.79, D:W.79, D:W.79, D:L.110 Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:A.49, D:A.86, D:S.88, D:S.88, D:D.128

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mann, S.I. et al., Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins. J. Am. Chem. Soc. (2017)

Release Date

2017-11-22

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Streptavidin