SMTL ID : 5wcz.1 (1 other biounit)

Crystal Structure of Wild-Type MalL from Bacillus subtilis with TS analogue 1-deoxynojirimycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x NOJ: 1-DEOXYNOJIRIMYCIN(Non-covalent)

NOJ.1: 15 residues within 4Å: Chain A: D.84, Y.87, H.127, F.169, F.188, Q.192, R.222, D.224, V.225, E.280, H.356, D.357, R.443, R.447 Ligands: GOL.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.84, A:D.84, A:H.127, A:Q.192, A:R.222, A:R.222, A:E.280, A:D.357, A:R.443, A:R.443, A:R.447 Water bridges: A:D.357

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: F.169, F.188, K.321, D.357, E.414, R.443 Ligands: NOJ.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.443 Water bridges: A:K.321, A:D.357, A:D.357, A:E.414 GOL.3: 8 residues within 4Å: Chain A: T.305, H.308, M.336, W.339, Q.340, N.349, T.350, L.351 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.340 Water bridges: A:I.303, A:T.350, A:T.350, A:T.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van der Kamp, M.W. et al., Dynamical origins of heat capacity changes in enzyme-catalysed reactions. Nat Commun (2018)

Release Date

2018-03-28

Peptides

Oligo-1,6-glucosidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oligo-1,6-glucosidase 1

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