SMTL ID : 5wda.1

Structure of the PulG pseudopilus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-25-mer

Ligands

25 x CA: CALCIUM ION(Non-covalent)

CA.1: 9 residues within 4Å: Chain A: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.117, A:V.119, A:S.122 CA.2: 9 residues within 4Å: Chain B: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.117, B:V.119, B:S.122 CA.3: 9 residues within 4Å: Chain C: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.117, C:V.119, C:S.122 CA.4: 9 residues within 4Å: Chain D: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.117, D:V.119, D:S.122 CA.5: 9 residues within 4Å: Chain E: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.117, E:V.119, E:S.122 CA.6: 9 residues within 4Å: Chain F: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.117, F:V.119, F:S.122 CA.7: 9 residues within 4Å: Chain G: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:D.117, G:V.119, G:S.122 CA.8: 9 residues within 4Å: Chain H: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.117, H:V.119, H:S.122 CA.9: 9 residues within 4Å: Chain I: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:D.117, I:V.119, I:S.122 CA.10: 9 residues within 4Å: Chain J: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:D.117, J:V.119, J:S.122 CA.11: 9 residues within 4Å: Chain K: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:D.117, K:V.119, K:S.122 CA.12: 9 residues within 4Å: Chain L: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:D.117, L:V.119, L:S.122 CA.13: 9 residues within 4Å: Chain M: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:D.117, M:V.119, M:S.122 CA.14: 9 residues within 4Å: Chain N: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:D.117, N:V.119, N:S.122 CA.15: 9 residues within 4Å: Chain O: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:D.117, O:V.119, O:S.122 CA.16: 9 residues within 4Å: Chain P: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:D.117, P:V.119, P:S.122 CA.17: 9 residues within 4Å: Chain Q: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:D.117, Q:V.119, Q:S.122 CA.18: 9 residues within 4Å: Chain R: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:D.117, R:V.119, R:S.122 CA.19: 9 residues within 4Å: Chain S: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:D.117, S:V.119, S:S.122 CA.20: 9 residues within 4Å: Chain T: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain T Metal complexes: T:D.117, T:V.119, T:S.122 CA.21: 9 residues within 4Å: Chain U: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:D.117, U:V.119, U:S.122 CA.22: 9 residues within 4Å: Chain V: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:D.117, V:V.119, V:S.122 CA.23: 9 residues within 4Å: Chain W: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:D.117, W:V.119, W:S.122 CA.24: 9 residues within 4Å: Chain X: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:D.117, X:V.119, X:S.122 CA.25: 9 residues within 4Å: Chain Y: L.114, D.117, V.119, P.120, E.121, S.122, N.123, D.124, D.125 3 PLIP interactions: 3 interactions with chain Y Metal complexes: Y:D.117, Y:V.119, Y:S.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez-Castilla, A. et al., Structure of the calcium-dependent type 2 secretion pseudopilus. Nat Microbiol (2017)

Release Date

2017-10-25

Peptides

General secretion pathway protein G: ABCDEFGHIJKLMNOPQRSTUVWXY

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Membrane

We predict this structure to be a membrane protein.
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General secretion pathway protein G