SMTL ID : 5wde.1

Crystal structure of the KIFC3 motor domain in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: R.11, R.13, P.14, T.16, Q.89, T.90, G.91, A.92, G.93, K.94, T.95, Y.96 Ligands: MG.2, UNX.22 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.11, A:G.91, A:A.92, A:G.93, A:K.94, A:T.95, A:Y.96 Water bridges: A:R.11, A:K.94, A:T.95, A:T.95, A:T.95, A:D.234 Salt bridges: A:K.94 pi-Stacking: A:Y.96, A:Y.96

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.95 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.95, H2O.1, H2O.1, H2O.3, H2O.4

46 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: E.155, I.156 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain A: M.98, N.108, L.232 Ligand excluded by PLIP UNX.5: 1 residues within 4Å: Chain A: E.173 Ligand excluded by PLIP UNX.6: 3 residues within 4Å: Chain A: H.203, S.204, S.205 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: V.168, L.171 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: K.148, E.149 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: D.32, H.40 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: T.172, E.173 Ligand excluded by PLIP UNX.11: 3 residues within 4Å: Chain A: Q.89, T.90, E.239 Ligand excluded by PLIP UNX.12: 1 residues within 4Å: Chain A: H.256 Ligand excluded by PLIP UNX.13: 1 residues within 4Å: Chain A: E.196 Ligand excluded by PLIP UNX.14: 3 residues within 4Å: Chain A: Q.63, R.110 Ligands: UNX.35 Ligand excluded by PLIP UNX.15: 2 residues within 4Å: Chain A: P.14, V.15 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain A: E.239, R.240, E.314 Ligand excluded by PLIP UNX.17: 4 residues within 4Å: Chain A: S.238, R.240, E.314, Y.317 Ligand excluded by PLIP UNX.18: 2 residues within 4Å: Chain A: F.56, S.57 Ligand excluded by PLIP UNX.19: 4 residues within 4Å: Chain A: E.136, Y.138, V.141, R.143 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain A: V.48, S.49 Ligand excluded by PLIP UNX.21: 2 residues within 4Å: Chain A: T.195, E.196 Ligand excluded by PLIP UNX.22: 2 residues within 4Å: Chain A: Y.96 Ligands: ADP.1 Ligand excluded by PLIP UNX.23: 2 residues within 4Å: Chain A: K.284 Ligands: UNX.26 Ligand excluded by PLIP UNX.24: 5 residues within 4Å: Chain A: L.146, G.147, K.148, F.188 Ligands: UNX.25 Ligand excluded by PLIP UNX.25: 3 residues within 4Å: Chain A: K.148, F.188 Ligands: UNX.24 Ligand excluded by PLIP UNX.26: 5 residues within 4Å: Chain A: V.141, L.142, L.154, K.284 Ligands: UNX.23 Ligand excluded by PLIP UNX.27: 5 residues within 4Å: Chain A: L.42, H.43, K.44, E.309, T.312 Ligand excluded by PLIP UNX.28: 4 residues within 4Å: Chain A: K.310, N.311, T.312, S.313 Ligand excluded by PLIP UNX.29: 3 residues within 4Å: Chain A: Q.175, Q.177, D.181 Ligand excluded by PLIP UNX.30: 6 residues within 4Å: Chain A: R.11, Q.62, V.65, T.97, G.106, I.107 Ligand excluded by PLIP UNX.31: 6 residues within 4Å: Chain A: Y.87, G.88, L.235, A.236, S.238, L.261 Ligand excluded by PLIP UNX.32: 4 residues within 4Å: Chain A: K.229, D.291, S.292 Ligands: UNX.33 Ligand excluded by PLIP UNX.33: 5 residues within 4Å: Chain A: I.212, K.229, N.231, S.292 Ligands: UNX.32 Ligand excluded by PLIP UNX.34: 4 residues within 4Å: Chain A: V.119, W.126, E.127, Y.128 Ligand excluded by PLIP UNX.35: 5 residues within 4Å: Chain A: S.61, Q.62, Q.63, R.110 Ligands: UNX.14 Ligand excluded by PLIP UNX.36: 3 residues within 4Å: Chain A: D.34, D.35, D.36 Ligand excluded by PLIP UNX.37: 1 residues within 4Å: Chain A: Y.138 Ligand excluded by PLIP UNX.38: 2 residues within 4Å: Chain A: T.26, N.27 Ligand excluded by PLIP UNX.39: 3 residues within 4Å: Chain A: S.178, V.179 Ligands: UNX.40 Ligand excluded by PLIP UNX.40: 4 residues within 4Å: Chain A: S.178, V.179, D.180 Ligands: UNX.39 Ligand excluded by PLIP UNX.41: 2 residues within 4Å: Chain A: P.47 Ligands: UNX.42 Ligand excluded by PLIP UNX.42: 3 residues within 4Å: Chain A: G.45, P.47 Ligands: UNX.41 Ligand excluded by PLIP UNX.43: 3 residues within 4Å: Chain A: L.200, N.201, E.202 Ligand excluded by PLIP UNX.44: 3 residues within 4Å: Chain A: T.191, T.194, T.195 Ligand excluded by PLIP UNX.45: 2 residues within 4Å: Chain A: G.248, S.249 Ligand excluded by PLIP UNX.46: 4 residues within 4Å: Chain A: E.136, R.193, N.201, S.207 Ligand excluded by PLIP UNX.47: 3 residues within 4Å: Chain A: S.204, S.207, A.209 Ligand excluded by PLIP UNX.48: 3 residues within 4Å: Chain A: G.79, N.81, T.227 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, H.W. et al., Structural basis of small molecule ATPase inhibition of a human mitotic kinesin motor protein. Sci Rep (2017)

Release Date

2017-08-09

Peptides

Kinesin-like protein KIFC3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kinesin-like protein KIFC3