SMTL ID : 5wdh.1

Motor domain of human kinesin family member C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.29, R.31, P.32, L.34, Q.124, T.125, G.126, S.127, G.128, K.129, T.130, F.131 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.29, A:G.126, A:S.127, A:G.128, A:K.129, A:T.130, A:F.131 Water bridges: A:K.129, A:T.130, A:T.130, A:T.130 Salt bridges: A:K.129 pi-Stacking: A:F.131, A:F.131

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.130, D.278 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.130, H2O.1, H2O.1, H2O.1, H2O.1

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 3 residues within 4Å: Chain A: F.155, C.222, E.223 No protein-ligand interaction detected (PLIP) UNX.4: 6 residues within 4Å: Chain A: G.136, P.137, G.138, G.139, D.140, L.143 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain A: D.98, P.141, Q.142, R.149 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: E.199, I.200, K.332 No protein-ligand interaction detected (PLIP) UNX.7: 5 residues within 4Å: Chain A: P.41, P.42, G.43, L.44, L.45 No protein-ligand interaction detected (PLIP) UNX.8: 3 residues within 4Å: Chain A: Y.328, Q.338, G.342 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, H.W. et al., Structural basis of small molecule ATPase inhibition of a human mitotic kinesin motor protein. Sci Rep (2017)

Release Date

2017-08-09

Peptides

Kinesin-like protein KIFC1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kinesin-like protein KIFC1