SMTL ID : 5wea.1

Human Argonaute2 Helix-7 Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

monomer

Ligands

1 x A- A- A- A- A- A- A- U: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*U)-3')(Non-covalent)

A-A-A-A-A-A-A-U.1: 41 residues within 4Å: Chain A: A.221, F.294, Y.311, F.312, H.316, H.336, T.337, Y.338, A.369, G.524, T.526, Y.529, K.533, T.544, Q.545, C.546, V.547, Q.548, N.551, Q.558, T.559, N.562, L.563, K.566, K.709, R.714, H.753, I.756, Q.757, T.759, S.760, R.761, Y.790, R.792, C.793, R.795, V.797, S.798, Y.804, R.812, Y.815 Protein-ligand interaction information (PLIP) not available

1 x IPH: PHENOL(Non-covalent)

IPH.2: 6 residues within 4Å: Chain A: L.650, I.651, Y.654, K.660, L.694, E.695 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.650, A:Y.654, A:K.660, A:L.694

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klum, S.M. et al., Helix-7 in Argonaute2 shapes the microRNA seed region for rapid target recognition. EMBO J. (2018)

Release Date

2017-11-22

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2