SMTL ID : 5weg.1 (1 other biounit)

Crystal Structure of UDP-glucose pyrophosphorylase from Sugarcane

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.91, Q.124, I.125, A.233, I.234, V.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.91, A:K.91, A:V.235 EDO.2: 6 residues within 4Å: Chain A: K.418, W.436, F.437, G.438, E.458, I.459 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.418, A:I.459 Water bridges: A:D.461 EDO.3: 6 residues within 4Å: Chain A: P.66, Y.67, P.256, N.357, V.358, P.359 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.67, A:D.68, A:D.68, A:V.358

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: T.99, K.106, K.367 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.99, A:T.99 Water bridges: A:T.99, A:T.99 Salt bridges: A:K.106, A:K.367 SO4.5: 4 residues within 4Å: Chain A: R.112, N.113, T.381, L.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.382 Salt bridges: A:R.112 SO4.6: 6 residues within 4Å: Chain A: H.199, G.200, N.302, A.342, A.343, G.344 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:H.199, A:G.200, A:N.302, A:A.343, A:G.344 Water bridges: A:H.199, A:N.227, A:N.300, A:T.341 Salt bridges: A:H.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cotrim, C.A. et al., Crystal structure and insights into the oligomeric state of UDP-glucose pyrophosphorylase from sugarcane. PLoS ONE (2018)

Release Date

2018-03-14

Peptides

UTP--glucose-1-phosphate uridylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UTP--glucose-1-phosphate uridylyltransferase

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