SMTL ID : 5wf5.1

Agonist bound human A2a adenosine receptor with D52N mutation at 2.60 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x UKA: 6-(2,2-diphenylethylamino)-9-[(2R,3R,4S,5S)-5-(ethylcarbamoyl)-3,4-dihydroxy-oxolan-2-yl]-N-[2-[(1-pyridin-2-ylpiperidin-4-yl)carbamoylamino]ethyl]purine-2-carboxamide(Non-covalent)

UKA.1: 26 residues within 4Å: Chain A: A.94, I.97, S.98, V.115, L.116, T.119, Q.120, I.123, L.198, F.199, E.200, M.208, N.212, W.424, L.427, H.428, I.430, N.431, T.434, H.442, L.445, M.448, Y.449, I.452, S.455, H.456 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Q.120, A:I.123, A:E.200, A:W.424, A:L.427, A:I.430, A:T.434, A:H.442, A:M.448, A:Y.449, A:I.452 Hydrogen bonds: A:T.119, A:E.200, A:E.200, A:N.431, A:N.431, A:S.455, A:S.455, A:H.456 pi-Stacking: A:F.199, A:F.199, A:H.442

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 3 residues within 4Å: Chain A: W.174, N.206, F.211 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.174, A:F.211 Hydrogen bonds: A:N.206 OLC.3: 2 residues within 4Å: Chain A: G.107, I.111 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

White, K.L. et al., Structural Connection between Activation Microswitch and Allosteric Sodium Site in GPCR Signaling. Structure (2018)

Release Date

2018-02-21

Peptides

Human A2a adenosine receptor T4L chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Human A2a adenosine receptor T4L chimera