SMTL ID : 5wfg.2 (1 other biounit)

Crystal structure of the TarA wall teichoic acid glycosyltransferase bound to UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

3 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 13 residues within 4Å: Chain A: G.108, A.109, A.110, G.136, Y.137, A.161, L.162, G.163, G.187, G.188, D.191 Chain C: F.87, V.192 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:A.109, A:A.110, A:G.136, A:G.136, A:G.188, A:D.191, C:V.192 Water bridges: A:F.138 UDP.2: 13 residues within 4Å: Chain A: F.87, V.192 Chain B: G.108, A.109, G.136, Y.137, A.161, L.162, G.163, A.164, G.187, G.188, D.191 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.109, B:G.136, B:Y.137, B:A.164, B:Q.167, B:D.191 pi-Stacking: B:Y.137 Hydrophobic interactions: A:F.87 UDP.3: 15 residues within 4Å: Chain B: F.87, V.192 Chain C: G.108, A.109, A.110, G.136, Y.137, A.161, L.162, G.163, A.164, Q.167, G.187, G.188, D.191 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:A.109, C:A.110, C:G.136, C:A.164, C:Q.167, C:G.188, C:D.191, B:V.192 pi-Stacking: C:Y.137 Hydrophobic interactions: B:F.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kattke, M.D. et al., Structure and mechanism of TagA, a novel membrane-associated glycosyltransferase that produces wall teichoic acids in pathogenic bacteria. Plos Pathog. (2019)

Release Date

2019-01-16

Peptides

N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase

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