SMTL ID : 5whr.1

Discovery of a novel and selective IDO-1 inhibitor PF-06840003 and its characterization as a potential clinical candidate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: Y.116, F.153, S.157, V.160, F.204, I.207, F.216, S.253, A.254, G.255, F.260, R.333, H.336, I.339, V.340, Y.343, I.344, G.368, T.369, G.370, G.371, T.372, L.374, F.377, L.378, V.381 Ligands: AOJ.2 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:F.153, A:V.160, A:F.204, A:I.207, A:F.216, A:F.260, A:I.339, A:V.340, A:Y.343, A:Y.343, A:L.374, A:F.377, A:F.377, A:L.378 Hydrogen bonds: A:G.370, A:G.371, A:T.372, A:T.372 Salt bridges: A:R.333 Metal complexes: A:H.336 HEM.3: 27 residues within 4Å: Chain B: Y.116, F.153, S.157, V.160, F.204, I.207, F.216, S.253, A.254, G.255, F.260, R.333, H.336, I.339, V.340, Y.343, I.344, G.368, T.369, G.370, G.371, T.372, L.374, F.377, L.378, V.381 Ligands: AOJ.4 24 PLIP interactions: 24 interactions with chain B, Hydrophobic interactions: B:F.153, B:V.160, B:F.204, B:F.204, B:I.207, B:F.216, B:F.260, B:I.339, B:V.340, B:Y.343, B:Y.343, B:T.372, B:L.374, B:F.377, B:F.377, B:L.378 Hydrogen bonds: B:G.370, B:G.371, B:T.372, B:T.372 Water bridges: B:G.368, B:L.374 Salt bridges: B:R.333 Metal complexes: B:H.336

2 x AOJ: (3R)-3-(5-fluoro-1H-indol-3-yl)pyrrolidine-2,5-dione(Non-covalent)

AOJ.2: 14 residues within 4Å: Chain A: Y.116, C.119, V.120, F.153, S.157, F.216, L.224, G.252, S.253, A.254, G.368, T.369, G.370 Ligands: HEM.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.116, A:V.120, A:F.153, A:F.216 Hydrogen bonds: A:S.157, A:S.157, A:A.254, A:T.369 AOJ.4: 15 residues within 4Å: Chain B: Y.116, C.119, V.120, F.153, F.154, S.157, F.216, L.224, G.252, S.253, A.254, G.368, T.369, G.370 Ligands: HEM.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.116, B:V.120, B:F.153, B:F.153, B:F.216 Hydrogen bonds: B:S.157, B:S.157, B:A.254, B:G.255, B:T.369

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crosignani, S. et al., Discovery of a Novel and Selective Indoleamine 2,3-Dioxygenase (IDO-1) Inhibitor 3-(5-Fluoro-1H-indol-3-yl)pyrrolidine-2,5-dione (EOS200271/PF-06840003) and Its Characterization as a Potential Clinical Candidate. J. Med. Chem. (2017)

Release Date

2017-12-27

Peptides

Indoleamine 2,3-dioxygenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Indoleamine 2,3-dioxygenase 1