- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- monomer
- Ligands
- 1 x AQD: Nemonapride(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 6 residues within 4Å:- Chain A: Y.147, G.152, S.153, R.155, Q.156
- Ligands: GOL.23
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.147, A:S.153, A:Q.156
- Water bridges: A:R.154
- Salt bridges: A:R.155
PO4.3: 2 residues within 4Å:- Chain A: Q.224, R.345
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.224
- Salt bridges: A:R.345
PO4.4: 1 residues within 4Å:- Chain A: L.89
No protein-ligand interaction detected (PLIP)- 9 x OLA: OLEIC ACID(Non-covalent)
OLA.5: 10 residues within 4Å:- Chain A: V.63, T.71, N.74, S.75, V.78, S.79, A.82, L.157, W.164
- Ligands: PEG.21
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.63, A:V.78, A:A.82, A:L.157, A:W.164
- Hydrogen bonds: A:T.71
OLA.6: 11 residues within 4Å:- Chain A: A.40, A.41, G.44, L.47, L.48, A.51, E.99, S.386, W.390, V.394
- Ligands: OLA.7
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.47, A:L.48, A:A.51, A:W.390, A:W.390, A:W.390, A:V.394
- Hydrogen bonds: A:E.99
OLA.7: 4 residues within 4Å:- Chain A: R.383, S.386, A.387
- Ligands: OLA.6
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:R.383, A:A.387
- Hydrogen bonds: A:S.386, A:S.386
OLA.8: 5 residues within 4Å:- Chain A: F.128, C.131, L.166, Y.199, C.203
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.128, A:L.166
OLA.9: 10 residues within 4Å:- Chain A: G.55, L.58, V.59, S.62, P.400, T.404, V.405, F.410, V.413, F.414
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.58, A:V.59, A:P.400, A:T.404, A:V.405, A:V.413, A:F.414, A:F.414
OLA.10: 10 residues within 4Å:- Chain A: L.213, Y.216, W.217, F.220, Q.224, R.345, P.352, V.355, G.356, L.359
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:Y.216, A:F.220, A:F.220, A:P.352, A:P.352, A:V.355, A:L.359
- Hydrogen bonds: A:Q.224
- Salt bridges: A:R.345
OLA.11: 3 residues within 4Å:- Chain A: F.138, A.142, V.143
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.143
OLA.12: 5 residues within 4Å:- Chain A: G.356, A.357, L.360, V.405, F.406
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:A.357, A:L.360, A:V.405, A:F.406, A:F.406
OLA.13: 5 residues within 4Å:- Chain A: F.206, C.209, I.370, T.371, L.374
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.370, A:L.374
- 9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.14: 2 residues within 4Å:- Chain A: P.364, L.384
No protein-ligand interaction detected (PLIP)PEG.15: 2 residues within 4Å:- Chain A: V.198, L.374
No protein-ligand interaction detected (PLIP)PEG.16: 4 residues within 4Å:- Chain A: M.118, M.121, A.168, L.175
No protein-ligand interaction detected (PLIP)PEG.17: 2 residues within 4Å:- Chain A: V.46, I.49
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.93
PEG.18: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PEG.19: 3 residues within 4Å:- Chain A: L.107, S.108
- Ligands: PEG.20
No protein-ligand interaction detected (PLIP)PEG.20: 4 residues within 4Å:- Chain A: S.108, R.110, L.111
- Ligands: PEG.19
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.108
- Water bridges: A:S.108, A:R.110
PEG.21: 4 residues within 4Å:- Chain A: W.164, L.165, A.168
- Ligands: OLA.5
No protein-ligand interaction detected (PLIP)PEG.22: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, S. et al., D4 dopamine receptor high-resolution structures enable the discovery of selective agonists. Science (2017)
- Release Date
- 2017-10-18
- Peptides
- D(4) dopamine receptor, soluble cytochrome b562 chimera: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- monomer
- Ligands
- 1 x AQD: Nemonapride(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 9 x OLA: OLEIC ACID(Non-covalent)
- 9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, S. et al., D4 dopamine receptor high-resolution structures enable the discovery of selective agonists. Science (2017)
- Release Date
- 2017-10-18
- Peptides
- D(4) dopamine receptor, soluble cytochrome b562 chimera: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.