- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.14 Å
- Oligo State
- monomer
- Ligands
- 1 x AQD: Nemonapride(Non-covalent)
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 6 residues within 4Å:- Chain A: Y.147, G.152, S.153, R.155, Q.156
- Ligands: PO4.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.147, A:S.153, A:Q.156
- Water bridges: A:R.154
- Salt bridges: A:R.155
PO4.3: 1 residues within 4Å:- Chain A: R.345
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.345
- Salt bridges: A:R.345
PO4.4: 2 residues within 4Å:- Chain A: L.89, P.93
No protein-ligand interaction detected (PLIP)PO4.5: 5 residues within 4Å:- Chain A: P.72, R.137, A.140, R.155
- Ligands: PO4.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.155, A:Q.156
- Salt bridges: A:R.137
PO4.6: 3 residues within 4Å:- Chain A: A.251, D.252, Q.319
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.252, A:Q.319, A:Q.319
- Water bridges: A:D.252
- 8 x OLA: OLEIC ACID(Non-covalent)
OLA.7: 11 residues within 4Å:- Chain A: V.63, Q.70, T.71, S.75, V.78, S.79, A.82, L.86, L.157, W.164
- Ligands: PEG.22
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.78, A:A.82, A:L.86, A:L.157, A:W.164
- Hydrogen bonds: A:T.71
- Water bridges: A:S.75
OLA.8: 11 residues within 4Å:- Chain A: Q.37, A.40, G.44, L.47, L.48, A.51, E.99, S.386, W.390, V.394
- Ligands: PEG.23
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:A.51, A:W.390, A:W.390, A:W.390, A:V.394
- Hydrogen bonds: A:S.386, A:S.386
OLA.9: 6 residues within 4Å:- Chain A: F.128, A.169, V.170, Y.199, C.203, P.208
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.128, A:F.128, A:A.169, A:V.170, A:P.208
OLA.10: 10 residues within 4Å:- Chain A: G.55, L.58, V.59, S.62, P.400, T.404, F.410, R.411, V.413, F.414
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:L.58, A:L.58, A:V.59, A:P.400, A:T.404, A:F.410, A:V.413, A:F.414, A:F.414, A:F.414
- Salt bridges: A:R.411
OLA.11: 10 residues within 4Å:- Chain A: L.213, Y.216, W.217, F.220, R.345, P.352, V.355, G.356, L.360
- Ligands: OLA.13
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.213, A:Y.216, A:F.220, A:F.220, A:V.355, A:L.360
- Salt bridges: A:R.345
OLA.12: 4 residues within 4Å:- Chain A: F.138, A.142, V.143, L.215
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.138, A:V.143, A:L.215
OLA.13: 7 residues within 4Å:- Chain A: P.352, V.353, G.356, A.357, L.360, F.406
- Ligands: OLA.11
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.353, A:A.357, A:L.360, A:F.406
OLA.14: 5 residues within 4Å:- Chain A: F.206, V.367, I.370, T.371, L.374
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.367, A:I.370, A:L.374
- 9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.15: 3 residues within 4Å:- Chain A: V.367, V.368, L.384
No protein-ligand interaction detected (PLIP)PEG.16: 2 residues within 4Å:- Chain A: V.202, I.370
No protein-ligand interaction detected (PLIP)PEG.17: 6 residues within 4Å:- Chain A: A.117, M.118, M.121, A.168, A.172, L.175
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.168
PEG.18: 2 residues within 4Å:- Chain A: L.42, P.93
No protein-ligand interaction detected (PLIP)PEG.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PEG.20: 3 residues within 4Å:- Chain A: S.108, L.111
- Ligands: PEG.21
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.108
PEG.21: 2 residues within 4Å:- Chain A: S.108
- Ligands: PEG.20
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.108
PEG.22: 2 residues within 4Å:- Chain A: W.164
- Ligands: OLA.7
No protein-ligand interaction detected (PLIP)PEG.23: 2 residues within 4Å:- Chain A: A.387
- Ligands: OLA.8
No protein-ligand interaction detected (PLIP)- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, S. et al., D4 dopamine receptor high-resolution structures enable the discovery of selective agonists. Science (2017)
- Release Date
- 2017-10-18
- Peptides
- D(4) dopamine receptor, soluble cytochrome b562 chimera: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.14 Å
- Oligo State
- monomer
- Ligands
- 1 x AQD: Nemonapride(Non-covalent)
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
- 8 x OLA: OLEIC ACID(Non-covalent)
- 9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, S. et al., D4 dopamine receptor high-resolution structures enable the discovery of selective agonists. Science (2017)
- Release Date
- 2017-10-18
- Peptides
- D(4) dopamine receptor, soluble cytochrome b562 chimera: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.