SMTL ID : 5wiz.1

Phosphotriesterase variant S5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.23, H.25, K.137, D.269 Ligands: ZN.2, CAC.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.23, A:H.25, A:D.269 ZN.2: 6 residues within 4Å: Chain A: W.99, K.137, H.169, H.198 Ligands: ZN.1, CAC.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.169, A:H.198 ZN.5: 6 residues within 4Å: Chain B: H.23, H.25, K.137, D.269 Ligands: ZN.6, CAC.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.23, B:H.25, B:D.269 ZN.6: 5 residues within 4Å: Chain B: K.137, H.169, H.198 Ligands: ZN.5, CAC.9 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.169, B:H.198

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 4 residues within 4Å: Chain A: F.19, R.305, Q.311, T.318 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.19 Hydrogen bonds: A:R.305, A:Q.311 MPD.7: 5 residues within 4Å: Chain B: E.185, G.188, L.189, S.190, P.191 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.188 MPD.8: 2 residues within 4Å: Chain A: L.104 Chain B: L.100 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.100, A:L.104

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.4: 9 residues within 4Å: Chain A: H.23, H.25, W.99, K.137, H.169, H.198, D.269 Ligands: ZN.1, ZN.2 No protein-ligand interaction detected (PLIP) CAC.9: 9 residues within 4Å: Chain B: H.23, H.25, W.99, K.137, H.169, H.198, D.269 Ligands: ZN.5, ZN.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miton, C.M. et al., Phosphotriesterase variant S5. To Be Published

Release Date

2019-01-23

Peptides

Phosphotriesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

Phosphotriesterase

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