SMTL ID : 5wj8.1

Crystal Structure of Human Cadherin-23 EC13-14

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.87, G.89, K.91, D.93 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.87, A:G.89, A:K.91, H2O.2, H2O.4 CA.2: 5 residues within 4Å: Chain A: E.18, D.72, E.74, D.107 Ligands: CA.3 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.18, A:D.72, A:E.74, A:D.107, H2O.1, H2O.4 CA.3: 7 residues within 4Å: Chain A: E.18, E.74, D.104, E.105, D.107, D.141 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.18, A:E.74, A:D.104, A:E.105, A:D.141 CA.4: 6 residues within 4Å: Chain A: N.106, N.108, D.139, D.141, N.145, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.108, A:D.139, A:D.139, A:D.141, A:N.145

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: R.28 Ligand excluded by PLIP

1 x K: POTASSIUM ION(Non-covalent)

K.6: 1 residues within 4Å: Chain A: E.25 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaiganesh, A. et al., Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness. Structure (2018)

Release Date

2018-07-04

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-23