SMTL ID : 5wjm.1

Crystal Structure of Mouse Cadherin-23 EC17-18

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.2, N.3, D.33, D.35, N.39, D.88 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.2, A:N.3, A:D.33, A:N.39, A:D.88 CA.2: 4 residues within 4Å: Chain A: E.19, D.73, E.75, D.109 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.19, A:D.73, A:E.75, A:D.109 CA.3: 7 residues within 4Å: Chain A: E.19, E.75, D.106, I.107, D.109, N.110, D.142 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.19, A:E.75, A:D.106, A:I.107, A:D.142 CA.4: 6 residues within 4Å: Chain A: N.108, N.110, D.140, D.142, N.146, D.193 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.110, A:D.140, A:D.142, A:N.146, A:D.193 CA.5: 6 residues within 4Å: Chain A: E.125, E.180, D.214, E.215, N.216, D.217 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.125, A:E.180, A:D.214, A:E.215, A:D.217 CA.6: 5 residues within 4Å: Chain A: E.125, D.178, E.180, N.216, D.217 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.125, A:D.178, A:E.180, A:D.217

1 x K: POTASSIUM ION(Non-covalent)

K.7: 1 residues within 4Å: Chain A: D.204 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.204, A:D.204

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.8: 5 residues within 4Å: Chain A: G.49, P.51, F.79, Y.80, N.81 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.80 Hydrogen bonds: A:N.81, A:N.81, A:N.81 MPD.9: 5 residues within 4Å: Chain A: S.130, F.163, T.172, V.173, N.174 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.163 Hydrogen bonds: A:V.173, A:N.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaiganesh, A. et al., Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness. Structure (2018)

Release Date

2018-07-04

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-23