SMTL ID : 5wjq.1

mouseZFP568-ZnF2-11 in complex with DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

5 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 4 residues within 4Å: Chain A: A.28 Chain B: T.1, G.2, C.3 No protein-ligand interaction detected (PLIP) TRS.2: 5 residues within 4Å: Chain A: G.24, G.25, G.26 Chain B: C.5, T.6 No protein-ligand interaction detected (PLIP) TRS.3: 3 residues within 4Å: Chain A: G.8 Chain B: G.22, C.23 No protein-ligand interaction detected (PLIP) TRS.4: 5 residues within 4Å: Chain A: G.4, G.5, G.6 Chain B: C.25, A.26 No protein-ligand interaction detected (PLIP) TRS.15: 6 residues within 4Å: Chain C: E.94, C.95, D.97, C.98, D.99, K.100 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.94, C:C.95, C:C.98, C:K.100

10 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain C: C.11, C.14, H.27, H.31 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.11, C:C.14, C:H.27, C:H.31 ZN.6: 4 residues within 4Å: Chain C: C.39, C.42, H.55, H.59 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.39, C:C.42, C:H.55, C:H.59 ZN.7: 4 residues within 4Å: Chain C: C.67, C.70, H.83, H.87 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.67, C:C.70, C:H.83, C:H.87 ZN.8: 4 residues within 4Å: Chain C: C.95, C.98, H.111, H.115 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.95, C:C.98, C:H.111, C:H.115 ZN.9: 4 residues within 4Å: Chain C: C.123, C.126, H.139, H.143 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.123, C:C.126, C:H.139, C:H.143 ZN.10: 4 residues within 4Å: Chain C: C.151, C.154, H.167, H.171 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.151, C:C.154, C:H.167, C:H.171 ZN.11: 4 residues within 4Å: Chain C: C.179, C.182, H.195, H.199 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.179, C:C.182, C:H.195, C:H.199 ZN.12: 4 residues within 4Å: Chain C: C.207, C.210, H.223, H.227 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.207, C:H.223, C:H.227 ZN.13: 4 residues within 4Å: Chain C: C.235, C.238, H.251, H.255 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.235, C:C.238, C:H.251, C:H.255 ZN.14: 4 residues within 4Å: Chain C: C.263, C.266, H.279, H.283 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, A. et al., DNA Conformation Induces Adaptable Binding by Tandem Zinc Finger Proteins. Cell (2018)

Release Date

2018-03-07

Peptides

Zinc finger protein 568: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
D

Zinc finger protein 568