SMTL ID : 5wk2.1

CRYSTAL STRUCTURE OF ANTI-CCL17 ANTIBODY M116

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 9 residues within 4Å: Chain B: W.33, R.59, V.99, G.100, A.102, D.103, V.104, W.105, D.106 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.59, B:R.59 Salt bridges: B:R.59 EPE.2: 8 residues within 4Å: Chain A: T.103, F.104, Q.106 Chain B: K.43, G.44, L.45, E.46, W.47 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.44, B:W.47, A:F.104

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: Q.166, S.168, S.182, S.183, T.184 Chain B: F.174, P.175, V.177, S.185, L.186, S.187 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.168, A:S.182, A:T.184, B:F.174, B:S.187 GOL.4: 7 residues within 4Å: Chain A: L.52, Y.55, E.61 Chain B: P.101, D.106, S.107, D.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.102, B:S.107, B:S.107 GOL.5: 3 residues within 4Å: Chain B: K.12, E.16, S.17 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.12, B:K.12, B:S.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teplyakov, A. et al., Structural insights into chemokine CCL17 recognition by antibody M116. Biochem Biophys Rep (2018)

Release Date

2017-12-20

Peptides

M116 LIGHT CHAIN: A
M116 HEAVY CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

M116 LIGHT CHAIN

M116 HEAVY CHAIN

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