SMTL ID : 5wl0.1

Co-crystal structure of Influenza A H3N2 PB2 (241-741) bound to VX-787

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 21G: (2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid(Non-covalent)

21G.1: 16 residues within 4Å: Chain A: F.84, S.85, F.86, S.98, R.116, H.118, E.122, F.124, K.137, F.165, Q.167, M.192, H.193, N.271, V.272, L.273 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.86, A:F.165, A:M.192 Hydrogen bonds: A:S.98, A:E.122, A:N.271, A:V.272, A:V.272 Water bridges: A:R.93 Salt bridges: A:R.116 pi-Stacking: A:F.84, A:H.118, A:H.118

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: K.100, R.116, R.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, X. et al., Structural basis for therapeutic inhibition of influenza A polymerase PB2 subunit. Sci Rep (2017)

Release Date

2017-09-06

Peptides

Polymerase basic protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polymerase basic protein 2