SMTL ID : 5wmg.1

N-terminal bromodomain of BRD4 in complex with OTX-015

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: W.40, L.51 Ligands: 6JF.4 No protein-ligand interaction detected (PLIP) EDO.2: 8 residues within 4Å: Chain A: R.17, T.19, Q.21, N.80, A.81, Q.82, E.126, E.127 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.19, A:N.80, A:A.81, A:E.127 Water bridges: A:R.17, A:R.17 EDO.3: 8 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, P.63, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

1 x 6JF: 4-{6-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1S)-1-(pyridin-2-yl)ethyl]-1H-pyrrolo[3,2-b]pyridin-3-yl}benzoic acid(Non-covalent)

6JF.4: 16 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, K.50, L.51, L.53, Y.56, C.95, Y.98, N.99, D.104, I.105, M.108 Ligands: EDO.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:F.42, A:L.53, A:I.105 Hydrogen bonds: A:N.99 Salt bridges: A:K.50 pi-Stacking: A:W.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ozer, H.G. et al., BRD4 Profiling Identifies Critical Chronic Lymphocytic Leukemia Oncogenic Circuits and Reveals Sensitivity to PLX51107, a Novel Structurally Distinct BET Inhibitor. Cancer Discov (2018)

Release Date

2018-08-01

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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