SMTL ID : 5wmo.1

Crystal Structure of HLA-B7 in complex with RPP, an EBV peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- PRO- PRO- ILE- PHE- ILE- ARG- ARG- LEU: RPP peptide from EBV(Non-covalent)

ARG-PRO-PRO-ILE-PHE-ILE-ARG-ARG-LEU.1: 28 residues within 4Å: Chain A: Y.7, Y.9, Y.59, R.62, N.63, I.66, Y.67, Q.70, T.73, E.76, S.77, N.80, Y.84, L.95, S.97, Y.99, D.114, Y.116, Y.123, T.143, W.147, E.152, Q.155, R.156, Y.159, E.163, W.167, Y.171 43 PLIP interactions: 43 interactions with chain A Hydrophobic interactions: A:Y.59, A:I.66, A:T.73, A:L.95, A:Y.116, A:Y.123, A:T.143, A:W.147, A:Q.155, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:R.62, A:R.62, A:Q.70, A:S.77, A:N.80, A:S.97, A:S.97, A:Y.116, A:T.143, A:Q.155, A:Y.159, A:Y.171 Water bridges: A:Y.9, A:R.62, A:R.62, A:T.73, A:T.73, A:T.73, A:E.76, A:D.114, A:D.114, A:D.114, A:R.156, A:R.156, A:E.163, A:E.163 Salt bridges: A:E.76, A:D.114, A:K.146, A:E.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rowntree, L.C. et al., Inability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses. J. Immunol. (2018)

Release Date

2018-06-06

Peptides

HLA class I histocompatibility antigen, B-7 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-7 alpha chain

Beta-2-microglobulin

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