SMTL ID : 5wn2.2 (1 other biounit)

APE1 exonuclease substrate complex with phosphoglycolate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: Q.95, A.96, L.98, F.120, D.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.96, A:L.98, A:D.121 EDO.2: 3 residues within 4Å: Chain A: G.156, L.157, R.160 No protein-ligand interaction detected (PLIP) EDO.3: 4 residues within 4Å: Chain A: H.173, E.174, R.195, G.199 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whitaker, A.M. et al., Molecular snapshots of APE1 proofreading mismatches and removing DNA damage. Nat Commun (2018)

Release Date

2018-02-28

Peptides

DNA-(apurinic or apyrimidinic site) lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA-(apurinic or apyrimidinic site) lyase

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