SMTL ID : 5wou.1

Crystal Structure of drosophila melanogaster Scribble PDZ1 domain in complex with Guk-Holder

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x LEU- PRO- SER- PHE- GLU- THR- ALA- LEU: GUK-holder, isoform A(Non-covalent)

LEU-PRO-SER-PHE-GLU-THR-ALA-LEU.1: 21 residues within 4Å: Chain A: G.20, L.21, G.22, L.23, S.24, I.25, A.26, G.27, G.30, S.31, T.32, P.33, S.44, R.45, H.76, V.80, L.83, K.84 Ligands: EDO.6, EDO.7, PGE.9 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:H.76, A:V.80, A:L.83, A:K.84 Hydrogen bonds: A:L.21, A:G.22, A:L.23, A:L.23, A:I.25, A:I.25, A:G.27, A:T.32, A:S.44, A:H.76 Water bridges: A:S.24, A:S.24, A:G.27 Salt bridges: A:R.45

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: N.67, C.86, G.87, A.88, V.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.67 Water bridges: A:A.88, A:V.89 EDO.3: 4 residues within 4Å: Chain A: Y.10, K.58, R.96, V.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.10, A:R.96 Water bridges: A:R.6 EDO.4: 8 residues within 4Å: Chain A: G.28, K.29, D.39, G.40, I.41, V.72, D.73, A.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.29, A:D.39, A:D.73 Water bridges: A:K.29, A:D.39 EDO.5: 10 residues within 4Å: Chain A: L.7, K.35, D.38, F.42, G.60, D.61, K.62, Q.95, R.96, E.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.35, A:K.62 Water bridges: A:D.38, A:G.60, A:E.97 EDO.6: 7 residues within 4Å: Chain A: H.76, Y.77, V.80 Ligands: LEU-PRO-SER-PHE-GLU-THR-ALA-LEU.1, LEU-PRO-SER-PHE-GLU-THR-ALA-LEU.1, EDO.7, PGE.9 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.77 EDO.7: 6 residues within 4Å: Chain A: V.80, K.84 Ligands: LEU-PRO-SER-PHE-GLU-THR-ALA-LEU.1, LEU-PRO-SER-PHE-GLU-THR-ALA-LEU.1, LEU-PRO-SER-PHE-GLU-THR-ALA-LEU.1, EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.84 EDO.8: 2 residues within 4Å: Chain A: D.37, D.38 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.38, A:D.39, A:D.39, A:D.39

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.9: 10 residues within 4Å: Chain A: G.28, K.29, G.30, S.31, D.75, H.76, Y.77 Ligands: LEU-PRO-SER-PHE-GLU-THR-ALA-LEU.1, LEU-PRO-SER-PHE-GLU-THR-ALA-LEU.1, EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.29, A:H.76 Water bridges: A:Y.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caria, S. et al., Drosophila melanogasterGuk-holder interacts with the Scribbled PDZ1 domain and regulates epithelial development with Scribbled and Discs Large. J. Biol. Chem. (2018)

Release Date

2018-02-28

Peptides

Protein lap4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein lap4