SMTL ID : 5wp5.1 (1 other biounit)

Arabidopsis thaliana phosphoethanolamine N-methyltransferase 2 (AtPMT2) in complex with SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: Y.262, V.263, S.264, G.290, C.291, G.292, D.312, L.313, S.314, M.317, A.337, D.338, C.339, R.355, D.356, T.357, H.360, I.361 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.263 Hydrogen bonds: A:V.263, A:G.290, A:L.313, A:S.314, A:D.338, A:C.339 Water bridges: A:C.291, A:R.355 SAH.2: 18 residues within 4Å: Chain A: R.9, W.16, G.61, A.62, G.63, R.66, F.67, L.81, D.82, F.83, I.84, A.106, D.107, V.108, N.126, W.127, Y.131, L.132 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.63, A:F.83, A:D.107, A:V.108, A:N.126, A:N.126, A:N.126 Water bridges: A:R.9, A:R.66 Salt bridges: A:R.66 pi-Stacking: A:F.83, A:F.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S.G. et al., Conformational changes in the di-domain structure of Arabidopsis phosphoethanolamine methyltransferase leads to active-site formation. J. Biol. Chem. (2017)

Release Date

2017-11-15

Peptides

Phosphomethylethanolamine N-methyltransferase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphomethylethanolamine N-methyltransferase 2

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