SMTL ID : 5wpj.1 (1 other biounit)

Structure of the class II 3-hydroxy-3-methylglutaryl-CoA reductase from Streptococcus pneumoniae bound to NADPH in open conformations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 20 residues within 4Å: Chain A: S.148, I.149, R.152, T.179, Q.180, E.181, A.182, M.183, G.184, A.185, N.186, M.187, N.189, L.212, N.214, D.281, K.327, G.329 Chain B: E.83, K.265 23 PLIP interactions: 20 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:A.185 Hydrogen bonds: A:Y.146, A:S.148, A:S.148, A:E.181, A:A.182, A:M.183, A:G.184, A:A.185, A:N.186, A:M.187, A:N.214, A:N.214, A:D.281, A:D.281, A:G.329 Water bridges: A:R.152, A:Q.180, B:K.265, B:K.265, B:N.269 Salt bridges: A:R.152 pi-Cation interactions: A:R.152

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Y.258 Chain B: Y.174, H.176 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.258 GOL.3: 6 residues within 4Å: Chain B: L.302, S.303, C.304, E.317, M.318, T.319 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.302, B:C.304, B:T.319 Water bridges: B:T.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, B.R. et al., Structural Features and Domain Movements Controlling Substrate Binding and Cofactor Specificity in Class II HMG-CoA Reductase. Biochemistry (2018)

Release Date

2018-04-25

Peptides

3-hydroxy-3-methylglutaryl coenzyme A reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-hydroxy-3-methylglutaryl coenzyme A reductase

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