SMTL ID : 5wqt.1

Structure of a protein involved in pyroptosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: G.86, M.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.86 GOL.2: 2 residues within 4Å: Chain A: L.58, V.97 No protein-ligand interaction detected (PLIP) GOL.3: 6 residues within 4Å: Chain A: L.49, R.52, A.53, E.56 Chain B: E.5, G.6 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.6, A:R.52, A:E.56

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 8 residues within 4Å: Chain A: L.49, A.50, A.53, L.70, D.71 Chain B: E.5, G.6 Ligands: CIT.5 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:E.5, A:D.71, A:D.71 Hydrophobic interactions: A:A.53, A:L.70 CIT.5: 4 residues within 4Å: Chain A: D.71 Chain B: E.10, E.18 Ligands: CIT.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuang, S. et al., Structure insight of GSDMD reveals the basis of GSDMD autoinhibition in cell pyroptosis. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-10-04

Peptides

Gasdermin-D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gasdermin-D