SMTL ID : 5wrp.1

T-state crystal structure of pyruvate kinase from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: T.377, Q.378, S.379, D.381, T.382, S.461 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.377, A:Q.378, A:S.379, A:G.380, A:T.382, A:T.382, A:T.382 Water bridges: A:S.461 PO4.2: 7 residues within 4Å: Chain B: T.377, Q.378, S.379, G.380, D.381, T.382, S.461 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.377, B:Q.378, B:S.379, B:G.380, B:T.382, B:T.382, B:T.382, B:T.382 Water bridges: B:S.461 PO4.3: 7 residues within 4Å: Chain C: T.377, Q.378, S.379, G.380, D.381, T.382, S.461 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:Q.378, C:S.379, C:S.379, C:S.379, C:G.380, C:D.381, C:T.382, C:T.382 Water bridges: C:S.461, C:T.462 PO4.4: 7 residues within 4Å: Chain D: T.377, Q.378, S.379, G.380, D.381, T.382, S.461 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:Q.378, D:S.379, D:G.380, D:D.381, D:T.382, D:T.382, D:S.461

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhong, W. et al., Allosteric pyruvate kinase-based "logic gate" synergistically senses energy and sugar levels in Mycobacterium tuberculosis. Nat Commun (2017)

Release Date

2017-11-15

Peptides

Pyruvate kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyruvate kinase

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