- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.07 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 5 residues within 4Å:- Chain A: N.95, R.96, I.315, Q.568
- Ligands: OSM.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.96
NAG.5: 4 residues within 4Å:- Chain A: N.241, A.244, W.384, K.388
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.388, A:K.388
NAG.6: 2 residues within 4Å:- Chain A: N.332, V.335
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.335
- 3 x IOD: IODIDE ION(Non-functional Binders)
- 10 x OSM: 1-(OXIDOSULFANYL)METHANAMINE(Non-covalent)
OSM.8: 3 residues within 4Å:- Chain A: Y.85, L.86, D.87
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.86, A:D.87
OSM.9: 3 residues within 4Å:- Chain A: H.377, T.378, H.429
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.429
OSM.10: 4 residues within 4Å:- Chain A: H.565, A.566, F.567, Q.568
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.566, A:F.567
OSM.11: 5 residues within 4Å:- Chain A: N.95, R.96, R.504, R.506
- Ligands: NAG.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.95, A:R.96, A:R.96, A:R.504, A:R.506, A:R.506
OSM.12: 4 residues within 4Å:- Chain A: E.77, N.80, K.81, P.145
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.80
OSM.13: 4 residues within 4Å:- Chain A: P.461, K.462, T.463, G.466
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.462
OSM.14: 4 residues within 4Å:- Chain A: R.76, P.149, K.150, N.419
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.76, A:K.150, A:N.419
OSM.15: 4 residues within 4Å:- Chain A: E.50, F.59, R.67, N.68
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.68, A:N.68
OSM.16: 7 residues within 4Å:- Chain A: E.363, Y.365, R.397, H.558, I.559, T.560, K.561
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.397, A:T.560, A:T.560, A:K.561
OSM.21: 8 residues within 4Å:- Chain A: V.215, N.216, Q.217, E.218, P.228, F.229, N.231
- Ligands: IOD.20
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.217, A:E.218, A:F.229, A:F.229
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x BR: BROMIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, P.K. et al., Structural basis of activation of mammalian heme peroxidases. Prog. Biophys. Mol. Biol. (2018)
- Release Date
- 2017-02-15
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.07 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x IOD: IODIDE ION(Non-functional Binders)
- 10 x OSM: 1-(OXIDOSULFANYL)METHANAMINE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x BR: BROMIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, P.K. et al., Structural basis of activation of mammalian heme peroxidases. Prog. Biophys. Mol. Biol. (2018)
- Release Date
- 2017-02-15
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A