SMTL ID : 5wwn.1

Crystal structure of Tsr1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: I.407, R.418, Y.422, K.620, K.696 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.422 Salt bridges: A:R.418, A:K.620, A:K.696 SO4.2: 3 residues within 4Å: Chain A: G.671, T.672, H.673 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.672, A:T.672, A:H.673 Salt bridges: A:H.673 SO4.3: 2 residues within 4Å: Chain A: R.99, H.139 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.99, A:H.139 SO4.4: 4 residues within 4Å: Chain A: Q.96, W.522, K.599, L.603 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.96, A:L.603 Salt bridges: A:K.599 SO4.5: 4 residues within 4Å: Chain A: E.88, V.89, L.133, Y.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.89 SO4.6: 5 residues within 4Å: Chain A: N.559, H.561, D.613, S.615, R.616 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.561 SO4.7: 4 residues within 4Å: Chain A: P.534, V.536, T.545, P.593 No protein-ligand interaction detected (PLIP) SO4.8: 4 residues within 4Å: Chain A: L.425, K.426, N.427, N.430 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.426, A:N.427, A:N.430 SO4.9: 5 residues within 4Å: Chain A: E.102, L.103, G.105, P.587, T.608 No protein-ligand interaction detected (PLIP) SO4.10: 2 residues within 4Å: Chain A: R.166, L.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Q. et al., Molecular architecture of the 90S small subunit pre-ribosome. Elife (2017)

Release Date

2017-06-28

Peptides

Ribosome biogenesis protein TSR1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome biogenesis protein TSR1