SMTL ID : 5wxg.1

Structure of TAF PHD finger domain binds to H3(1-15)K4ac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- ALY- GLN- THR- ALA: Histone H3K4ac(Non-covalent)

ALA-ARG-THR-ALY-GLN-THR-ALA.1: 18 residues within 4Å: Chain A: W.14, D.23, G.25, S.26, P.27, M.28, I.29, G.30, C.31, D.32, D.35, W.37, W.40, P.50, E.51, M.53, W.55 Ligands: MG.4 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.29, A:I.29, A:W.37, A:W.37, A:W.37, A:W.40, A:W.55 Hydrogen bonds: A:D.23, A:G.25, A:M.28, A:M.28, A:G.30, A:G.30, A:M.53 Water bridges: A:D.23 Salt bridges: A:D.32, A:D.35

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.31, C.34, C.57, C.60 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.31, A:C.34, A:C.57, A:C.60 ZN.3: 4 residues within 4Å: Chain A: C.16, C.19, H.39, C.42 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.16, A:C.19, A:H.39, A:C.42

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: D.23 Ligands: ALA-ARG-THR-ALY-GLN-THR-ALA.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, S. et al., Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-08-16

Peptides

Transcription initiation factor TFIID subunit 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription initiation factor TFIID subunit 3

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