SMTL ID : 5wxm.1

Crystal structure of the Imp3 and Mpp10 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-oligomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.78, S.80, A.81, R.84 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.78, A:A.81 Water bridges: A:S.80, A:R.84 Salt bridges: A:R.84 SO4.2: 6 residues within 4Å: Chain C: I.14, Q.15, N.16, D.19, R.86, A.123 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.15, C:N.16 Water bridges: C:N.16, C:N.16, C:R.86 Salt bridges: C:R.86 SO4.3: 5 residues within 4Å: Chain B: Y.19 Chain C: F.46, K.49, H.50 Chain D: S.11 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: B:Y.19, D:S.11 Water bridges: C:K.49 Salt bridges: C:K.49, C:H.50 SO4.4: 3 residues within 4Å: Chain C: T.78, S.80, R.84 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.78, C:S.80, C:S.80 Water bridges: C:S.80, C:R.84 Salt bridges: C:R.84 SO4.5: 4 residues within 4Å: Chain A: K.49, H.50 Chain B: S.11 Chain D: Y.19 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.11 Water bridges: A:K.49 Salt bridges: A:K.49, A:H.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Q. et al., Molecular architecture of the 90S small subunit pre-ribosome. Elife (2017)

Release Date

2017-06-28

Peptides

U3 small nucleolar ribonucleoprotein protein IMP3: AC
U3 small nucleolar RNA-associated protein MPP10: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
U

D
V

U3 small nucleolar ribonucleoprotein protein IMP3

U3 small nucleolar RNA-associated protein MPP10