SMTL ID : 5wy1.1

Crystal structure of mouse DNA methyltransferase 1 (T1505A mutant)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.27 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.69, C.72, C.130, H.134 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.72, A:C.130, A:H.134 ZN.2: 6 residues within 4Å: Chain A: C.366, G.367, C.369, C.372, C.404, N.406 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.366, A:C.369, A:C.372, A:C.404 ZN.3: 4 residues within 4Å: Chain A: H.506, C.533, C.607, C.610 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.506, A:C.533, A:C.607, A:C.610 ZN.4: 4 residues within 4Å: Chain A: C.1189, C.1191, C.1197, H.1214 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1189, A:C.1191, A:C.1197, A:H.1214 ZN.5: 4 residues within 4Å: Chain B: C.69, C.72, C.130, H.134 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.69, B:C.72, B:C.130, B:H.134 ZN.6: 6 residues within 4Å: Chain B: C.366, G.367, C.369, C.372, C.404, N.406 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.366, B:C.369, B:C.372, B:C.404 ZN.7: 4 residues within 4Å: Chain B: H.506, C.533, C.607, C.610 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.506, B:C.533, B:C.607, B:C.610 ZN.8: 4 residues within 4Å: Chain B: C.1189, C.1191, C.1197, H.1214 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1189, B:C.1191, B:C.1197, B:H.1214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanada, K. et al., Conserved threonine 1505 in the catalytic domain stabilizes mouse DNA methyltransferase 1. J. Biochem. (2017)

Release Date

2017-05-24

Peptides

DNA (cytosine-5)-methyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA (cytosine-5)-methyltransferase 1