- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 7VO: (2S,3S)-3-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid(Non-covalent)
- 11 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.2: 6 residues within 4Å:- Chain A: S.178, E.187, K.227, P.229, E.230, W.363
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:E.187
DMS.3: 7 residues within 4Å:- Chain A: Q.133, E.210
- Chain C: R.127, G.131, R.132
- Chain D: K.162, G.164
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:G.164
- Salt bridges: A:E.210
DMS.4: 8 residues within 4Å:- Chain A: K.162, G.164
- Chain B: R.127, G.131, Q.133
- Chain D: Q.133, E.210
- Ligands: DMS.9
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:E.210
DMS.5: 4 residues within 4Å:- Chain A: Y.182, E.185
- Chain D: Y.182, E.185
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain D- Salt bridges: A:E.185, D:E.185
- Hydrogen bonds: D:E.185
DMS.7: 5 residues within 4Å:- Chain B: S.178, E.187, K.227, P.229, W.363
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:E.187
DMS.8: 4 residues within 4Å:- Chain B: F.202, E.203, F.239, H.243
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:E.203
DMS.9: 6 residues within 4Å:- Chain B: Q.133
- Chain C: K.162, G.164
- Chain D: R.127, R.132
- Ligands: DMS.4
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:E.210
DMS.10: 4 residues within 4Å:- Chain B: Y.182
- Chain C: Y.182, E.185, R.193
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Salt bridges: B:E.185, C:E.185
DMS.12: 3 residues within 4Å:- Chain C: S.178, E.185, E.187
No protein-ligand interaction detected (PLIP)DMS.13: 3 residues within 4Å:- Chain C: F.202, F.239, H.243
No protein-ligand interaction detected (PLIP)DMS.15: 3 residues within 4Å:- Chain D: T.38, V.40, K.46
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hayashi, J. et al., Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri. Acta Crystallogr D Struct Biol (2017)
- Release Date
- 2017-04-19
- Peptides
- Isoleucine 2-epimerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 7VO: (2S,3S)-3-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid(Non-covalent)
- 11 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hayashi, J. et al., Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri. Acta Crystallogr D Struct Biol (2017)
- Release Date
- 2017-04-19
- Peptides
- Isoleucine 2-epimerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D