SMTL ID : 5wyb.1

Structure of Pseudomonas aeruginosa DspI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-hexamer

Ligands

6 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 12 residues within 4Å: Chain A: A.78, F.83, G.122, G.123, E.126, E.146, L.151, L.152, P.153, C.154, A.155 Chain B: F.245 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.78, A:E.146, A:L.151, B:F.245 Hydrogen bonds: A:E.126, A:C.154, A:A.155 MRD.3: 12 residues within 4Å: Chain B: A.78, F.83, G.122, G.123, E.126, E.146, L.151, L.152, P.153, C.154, A.155 Chain C: F.245 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:A.78, B:E.146, B:L.151, C:F.245 Hydrogen bonds: B:E.126, B:C.154, B:A.155 MRD.5: 12 residues within 4Å: Chain A: F.245 Chain C: A.78, F.83, G.122, G.123, E.126, E.146, L.151, L.152, P.153, C.154, A.155 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:A.78, C:E.146, C:L.151, A:F.245 Hydrogen bonds: C:E.126, C:C.154, C:A.155 MRD.7: 12 residues within 4Å: Chain D: A.78, F.83, G.122, G.123, E.126, E.146, L.151, L.152, P.153, C.154, A.155 Chain E: F.245 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: D:A.78, D:E.146, D:L.151, E:F.245 Hydrogen bonds: D:E.126, D:C.154, D:A.155 MRD.9: 12 residues within 4Å: Chain E: A.78, F.83, G.122, G.123, E.126, E.146, L.151, L.152, P.153, C.154, A.155 Chain F: F.245 7 PLIP interactions: 6 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:A.78, E:E.146, E:L.151, F:F.245 Hydrogen bonds: E:E.126, E:C.154, E:A.155 MRD.11: 12 residues within 4Å: Chain D: F.245 Chain F: A.78, F.83, G.122, G.123, E.126, E.146, L.151, L.152, P.153, C.154, A.155 7 PLIP interactions: 6 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: F:A.78, F:E.146, F:L.151, D:F.245 Hydrogen bonds: F:E.126, F:C.154, F:A.155

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: E.199, G.202, A.203 No protein-ligand interaction detected (PLIP) ACT.4: 3 residues within 4Å: Chain B: E.199, G.202, A.203 No protein-ligand interaction detected (PLIP) ACT.6: 3 residues within 4Å: Chain C: E.199, G.202, A.203 No protein-ligand interaction detected (PLIP) ACT.8: 3 residues within 4Å: Chain D: E.199, G.202, A.203 No protein-ligand interaction detected (PLIP) ACT.10: 3 residues within 4Å: Chain E: E.199, G.202, A.203 No protein-ligand interaction detected (PLIP) ACT.12: 3 residues within 4Å: Chain F: E.199, G.202, A.203 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis. Sci Rep (2018)

Release Date

2018-01-17

Peptides

Probable enoyl-CoA hydratase/isomerase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

E
B

F
B

Probable enoyl-CoA hydratase/isomerase

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