SMTL ID : 5wyd.1

Structural of Pseudomonas aeruginosa DspI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

3 x PTD: PENTANEDIAL(Non-covalent)

PTD.1: 3 residues within 4Å: Chain A: K.72, F.73, R.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.72, A:R.179, A:R.179 PTD.6: 1 residues within 4Å: Chain D: K.264 No protein-ligand interaction detected (PLIP) PTD.12: 1 residues within 4Å: Chain F: K.72 No protein-ligand interaction detected (PLIP)

7 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) IPA.3: 7 residues within 4Å: Chain B: F.261 Chain C: T.39, A.76, G.77, A.78, L.80 Ligands: IPA.4 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.80 Hydrogen bonds: C:T.39, C:A.78 IPA.4: 3 residues within 4Å: Chain C: P.36 Ligands: IPA.3, MPD.5 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:P.36 IPA.7: 2 residues within 4Å: Chain E: K.72 Ligands: MRD.10 No protein-ligand interaction detected (PLIP) IPA.8: 4 residues within 4Å: Chain E: F.13, D.14, Q.50 Ligands: IPA.9 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:F.13, E:D.14 Hydrogen bonds: E:Q.50 IPA.9: 1 residues within 4Å: Ligands: IPA.8 No protein-ligand interaction detected (PLIP) IPA.11: 1 residues within 4Å: Chain D: A.37 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:A.37

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 4 residues within 4Å: Chain B: K.264 Chain C: K.72, F.73 Ligands: IPA.4 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.73

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.10: 1 residues within 4Å: Ligands: IPA.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis. Sci Rep (2018)

Release Date

2018-01-31

Peptides

Probable enoyl-CoA hydratase/isomerase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
F

F
E

Probable enoyl-CoA hydratase/isomerase

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