SMTL ID : 5wyi.1

The Yaf9 YEATS domain Recognizing H3K122suc Peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-2-mer

Ligands

1 x ILE- MET- PRO- LYS- ASP- ILE- GLN- LEU: ILE-MET-PRO-LYS-ASP-ILE-GLN-LEU(Non-covalent)

ILE-MET-PRO-LYS-ASP-ILE-GLN-LEU.1: 11 residues within 4Å: Chain B: H.62, T.64, Y.65, W.84, G.85, E.86, F.87, R.109, R.111, H.113 Ligands: SIN.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:H.62, B:H.113 Hydrogen bonds: B:T.64, B:T.64, B:E.86, B:E.86, B:E.86, B:R.111 Water bridges: B:H.62, B:R.109

1 x SLL: (2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid(Non-covalent)

SLL.2: 8 residues within 4Å: Chain C: H.34, H.62, T.64, Y.65, G.83, W.84, G.85, E.86 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:Y.65, C:W.84, C:W.84 Hydrogen bonds: C:T.64, C:Y.65, C:W.84, C:G.85, C:E.86 Salt bridges: C:H.34

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 8 residues within 4Å: Chain B: H.34, T.64, Y.65, P.66, G.83, W.84, G.85 Ligands: ILE-MET-PRO-LYS-ASP-ILE-GLN-LEU.1 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.65 Hydrogen bonds: B:Y.65, B:W.84, B:G.85 Water bridges: B:H.34, B:W.84 Salt bridges: B:H.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., The Yaf9 YEATS domain Recognizing H3K122suc Peptide. To Be Published

Release Date

2018-01-17

Peptides

Yaf9: A
Yaf9: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Yaf9

Yaf9

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