SMTL ID : 5wyn.1

HtrA2 Pathogenic Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-trimer

Ligands

18 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: Y.162 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: N.159, E.161 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: V.264, L.266, P.277 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: I.265, L.266 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: V.193, L.260, H.262 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: Y.229, I.230, G.231, W.296 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: Y.162 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: N.159, E.161 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: V.264, L.266, P.277 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: I.265, L.266 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: V.193, L.260, H.262 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain B: Y.229, I.230, G.231, W.296 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain C: Y.162 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain C: N.159, E.161 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain C: V.264, L.266, P.277 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain C: I.265, L.266 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain C: V.193, L.260, H.262 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain C: Y.229, I.230, G.231, W.296 Ligand excluded by PLIP

3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.7: 4 residues within 4Å: Chain A: H.38, P.39, F.40, L.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.40, A:L.41 Salt bridges: A:H.38 MES.14: 4 residues within 4Å: Chain B: H.38, P.39, F.40, L.41 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.40, B:L.41 Salt bridges: B:H.38 MES.21: 4 residues within 4Å: Chain C: H.38, P.39, F.40, L.41 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:F.40, C:L.41 Salt bridges: C:H.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagh, A.R. et al., Structural basis of inactivation of human counterpart of mouse motor neuron degeneration 2 mutant in serine protease HtrA2. Biosci. Rep. (2018)

Release Date

2018-08-08

Peptides

Serine protease HTRA2, mitochondrial: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Serine protease HTRA2, mitochondrial